Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
total RNA-seq
68
ATAC-seq
20
ChIP-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
2
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
297
Transcription
77
DNA accessibility
20
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
120
July, 2018
105
August, 2017
39
November, 2019
36
May, 2021
31
October, 2019
24
May, 2022
18
February, 2023
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2021
4
March, 2020
4
November, 2020
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
326
bam
278
bigWig
267
tsv
139
fastq
40
bed narrowPeak
9
bed bed3+
6
txt
2
bed broadPeak
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bedpe bed3+
1
bigBed bedMethyl
1
tagAlign
Organism
405
Homo sapiens
Biosample type
405
tissue
Organ
377
pancreas
19
eye
1
brain
1
pituitary gland
1
skin of body
Project
381
AMP
24
T1D
Genome assembly (visualization)
322
hg19
298
GRCh38
Lab
349
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
6
missing controlled_by
month_released!
August, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
405 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
297
68
20
7
4
4
2
1
1
1
Download