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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
95
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
4
October, 2019
2
July, 2019
1
December, 2019
Available data
98
bed narrowPeak
64
xls
62
txt
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
237
Homo sapiens
Biosample type
237
tissue
Organ
237
kidney
Project
190
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
36
hg19
Lab
142
Katalin Susztak, Upenn
48
AMP-T2D consortium
47
KPMP
Audit category:
5
audit script error
BIOSAMPLE
ASSAY
237 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
64
49
27
13
6
1
1
1
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