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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
51
single cell RNA-seq
27
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
95
DNA accessibility
51
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
71
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
4
October, 2019
2
July, 2019
1
December, 2019
Available data
98
bed narrowPeak
64
xls
txt
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
175
Homo sapiens
Biosample type
175
tissue
Organ
175
kidney
Project
128
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
36
hg19
Lab
85
Katalin Susztak, Upenn
47
KPMP
43
AMP-T2D consortium
files.file_type!
txt
BIOSAMPLE
ASSAY
175 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
51
27
13
6
1
1
1
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