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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
13
DNase-seq
6
snATAC-seq
4
ChIP-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
95
DNA accessibility
4
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
128
August, 2021
47
September, 2023
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
4
October, 2019
2
July, 2019
1
December, 2019
Available data
80
bed narrowPeak
64
xls
62
txt
18
bam
16
bigWig
14
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
214
Homo sapiens
Biosample type
214
tissue
Organ
214
kidney
Project
167
AMP
47
KPMP
Genome assembly (visualization)
90
GRCh38
18
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
25
AMP-T2D consortium
Audit category:
5
audit script error
month_released!
April, 2019
BIOSAMPLE
ASSAY
214 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
snATAC-seq
ChIP-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
64
49
13
6
4
1
1
1
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