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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
145
ChIP-seq
20
ATAC-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
145
DNA binding
22
DNA accessibility
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
43
control
42
narrow histone mark
37
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
48
August, 2017
40
May, 2022
38
December, 2017
6
November, 2018
6
October, 2019
3
July, 2019
3
March, 2020
1
February, 2021
Available data
272
bam
252
bigWig
149
tsv
104
bed narrowPeak
70
tagAlign
69
fastq
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hic
Organism
338
Homo sapiens
Biosample type
338
tissue
Organ
338
liver
Project
338
AMP
Genome assembly (visualization)
254
hg19
225
GRCh38
Lab
298
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
338 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
145
20
2
1
1
1
1
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