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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
78
ChIP-seq
20
ATAC-seq
2
WGBS
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
78
DNA binding
20
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
37
narrow histone mark
26
control
15
broad histone mark
Date released
193
May, 2020
40
May, 2022
25
August, 2017
6
October, 2019
3
July, 2019
3
March, 2020
1
February, 2021
Available data
272
bam
252
bigWig
149
tsv
104
bed narrowPeak
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
271
Homo sapiens
Biosample type
271
tissue
Organ
271
liver
Project
271
AMP
Genome assembly (visualization)
201
hg19
172
GRCh38
Lab
231
AMP-T2D consortium
40
Karen Mohlke, UNC
files.file_type!
fastq
BIOSAMPLE
ASSAY
271 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
78
20
2
1
1
1
1
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