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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
75
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
75
DNA binding
22
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
37
transcription factor
21
histone modification
20
histone
17
control
11
broad histone mark
9
narrow histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
143
May, 2020
40
May, 2022
38
December, 2017
32
August, 2017
6
November, 2018
6
October, 2019
3
July, 2019
3
March, 2020
1
February, 2021
Available data
272
bam
252
bigWig
149
tsv
104
bed narrowPeak
71
fastq
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
272
Homo sapiens
Biosample type
272
tissue
Organ
272
liver
Project
272
AMP
Genome assembly (visualization)
228
hg19
206
GRCh38
Lab
232
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
75
20
3
2
1
1
1
1
1
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