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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
32
ATAC-seq
31
WGBS
13
ChIP-seq
11
single cell RNA-seq
1
Hi-C
Assay category
53
Transcription
32
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
September, 2017
1
August, 2018
1
October, 2022
Available data
82
fastq
47
zippedFastqFolder
28
bigWig
27
bam
17
tsv
10
bed narrowPeak
3
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
130
Homo sapiens
Biosample type
130
primary cell
Organ
130
epithelium
130
pancreas
Project
103
HPAP
27
AMP
Genome assembly (visualization)
28
GRCh38
22
hg19
Lab
103
Klaus Kaestner, Upenn
27
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
42
32
31
13
11
1
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