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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
13
ChIP-seq
12
single cell RNA-seq
10
ATAC-seq
Assay category
33
Transcription
13
DNA binding
10
DNA accessibility
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
14
August, 2017
14
September, 2018
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
Available data
56
fastq
42
bam
39
bigWig
29
zippedFastqFolder
22
tsv
14
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
56
Homo sapiens
Biosample type
56
primary cell
Organ
56
epithelium
56
pancreas
Project
42
AMP
14
HPAP
Genome assembly (visualization)
39
GRCh38
36
hg19
Lab
42
AMP-T2D consortium
14
Klaus Kaestner, Upenn
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
56 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic beta cell
21
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10
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