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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
16
WGBS
13
ChIP-seq
6
single cell RNA-seq
1
Hi-C
Assay category
27
Transcription
23
DNA accessibility
16
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
29
May, 2022
14
August, 2017
14
September, 2018
10
February, 2023
4
July, 2018
2
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
50
fastq
36
bam
33
bigWig
29
zippedFastqFolder
16
tsv
14
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
80
Homo sapiens
Biosample type
80
primary cell
Organ
80
epithelium
80
pancreas
Project
44
HPAP
36
AMP
Genome assembly (visualization)
33
GRCh38
31
hg19
Lab
44
Klaus Kaestner, Upenn
36
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
75
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
23
21
16
13
6
1
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