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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
15
total RNA-seq
14
WGBS
13
ChIP-seq
10
single cell RNA-seq
1
Hi-C
Assay category
25
Transcription
20
DNA accessibility
14
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
26
May, 2022
14
August, 2017
9
February, 2023
8
July, 2018
7
September, 2018
2
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
46
fastq
33
bam
30
bigWig
26
zippedFastqFolder
15
tsv
12
bed narrowPeak
5
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
73
Homo sapiens
Biosample type
73
primary cell
Organ
73
epithelium
73
pancreas
Project
40
HPAP
33
AMP
Genome assembly (visualization)
30
GRCh38
28
hg19
Lab
40
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
replicates.library.biosample.life_stage!
child
BIOSAMPLE
ASSAY
73 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
20
15
14
13
10
1
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