Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
15
total RNA-seq
14
WGBS
13
ChIP-seq
2
single cell RNA-seq
1
Hi-C
Assay category
20
DNA accessibility
17
Transcription
14
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
26
May, 2022
14
August, 2017
9
February, 2023
July, 2018
7
September, 2018
2
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
38
fastq
26
zippedFastqFolder
25
bam
22
bigWig
12
bed narrowPeak
7
tsv
5
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
65
Homo sapiens
Biosample type
65
primary cell
Organ
65
epithelium
65
pancreas
Project
40
HPAP
25
AMP
Genome assembly (visualization)
22
GRCh38
20
hg19
Lab
40
Klaus Kaestner, Upenn
25
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
replicates.library.biosample.life_stage!
child
month_released!
July, 2018
BIOSAMPLE
ASSAY
65 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
20
15
14
13
2
1
Download