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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
16
WGBS
12
single cell RNA-seq
10
ChIP-seq
1
Hi-C
Assay category
33
Transcription
23
DNA accessibility
16
DNA methylation
10
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
broad histone mark
Date released
29
May, 2022
14
September, 2018
11
August, 2017
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
53
fastq
39
bam
36
bigWig
29
zippedFastqFolder
22
tsv
11
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
83
Homo sapiens
Biosample type
83
primary cell
Organ
83
epithelium
83
pancreas
Project
44
HPAP
39
AMP
Genome assembly (visualization)
36
GRCh38
34
hg19
Lab
44
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
83 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
Hi-C
primary cell
pancreatic beta cell
23
21
16
12
10
1
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