Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
15
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
15
November, 2019
6
November, 2020
5
May, 2021
3
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
50
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
59
Homo sapiens
Biosample type
334
primary cell
60
cell line
24
in vitro differentiated cells
3
tissue
Organ
400
liver
73
pancreas
60
blood
60
bodily fluid
60
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
19
kidney
8
embryo
1
mammary gland
Project
56
AMP
4
T1D
Genome assembly (visualization)
49
hg19
48
GRCh38
Lab
54
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
57
inconsistent ontology term
biosample_type!
stem cell
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
60 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
15
6
2
1
1
glomerular visceral epithelial cell
1
1
See all biosamples
Download