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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
18
DNase-seq
1
FAIRE-seq
Assay category
167
Transcription
114
DNA binding
103
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Date released
39
May, 2022
14
June, 2019
14
September, 2018
12
February, 2023
7
August, 2020
6
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
Available data
52
bed narrowPeak
49
bigWig
40
bam
39
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
Organism
103
Homo sapiens
Biosample type
91
primary cell
cell line
12
tissue
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
35
musculature of body
34
connective tissue
32
eye
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
54
AMP
49
HPAP
Genome assembly (visualization)
49
GRCh38
46
hg19
Lab
54
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
103 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 13 more…
tissue
pigmented layer of retina
12
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