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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
22
DNase-seq
1
FAIRE-seq
Assay category
172
Transcription
144
DNA accessibility
142
DNA binding
53
DNA methylation
7
3D chromatin structure
Date released
47
February, 2023
39
May, 2022
16
June, 2019
14
September, 2018
9
October, 2019
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
1
July, 2019
Available data
93
bed narrowPeak
55
bigWig
46
bam
43
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
1
tar
Organism
144
Homo sapiens
Biosample type
91
primary cell
53
tissue
cell line
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
35
musculature of body
34
connective tissue
32
eye
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
95
AMP
49
HPAP
Genome assembly (visualization)
90
GRCh38
52
hg19
Lab
95
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
144 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 13 more…
tissue
coronary artery
36
2
pigmented layer of retina
12
tibial artery
1
2
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