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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
210
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1803
Transcription
1347
DNA binding
299
DNA accessibility
96
DNA methylation
30
3D chromatin structure
Date released
187
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
10
November, 2018
9
October, 2019
6
August, 2017
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2020
Available data
212
bam
212
bed narrowPeak
212
bigBed narrowPeak
212
bigWig
205
bed broadPeak
205
bigBed broadPeak
204
bed bed3+
41
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
298
Homo sapiens
Biosample type
210
tissue
88
primary cell
cell line
1
in vitro differentiated cells
Organ
87
kidney
36
limb
34
musculature of body
33
brain
30
heart
20
pancreas
19
epithelium
18
ureter
12
vasculature
10
blood vessel
10
lung
9
connective tissue
8
blood
8
bodily fluid
6
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
223
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
205
GRCh38
190
hg19
Lab
217
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
biosample_type!
cell line
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
299 results
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Clear Filters
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
6
1
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
+ See 20 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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