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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
WGBS
26
ChIP-seq
8
DNase-seq
1
RNA microarray
Assay category
57
DNA accessibility
55
Transcription
26
DNA binding
Target of assay
23
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
39
February, 2023
39
May, 2022
19
September, 2020
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
3
December, 2017
1
August, 2021
1
December, 2019
1
May, 2019
1
May, 2021
Available data
78
fastq
39
zippedFastqFolder
32
bam
16
bigWig
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
3
tsv
2
tagAlign
Organism
139
Homo sapiens
Biosample type
132
primary cell
cell line
4
in vitro differentiated cells
3
tissue
Organ
218
kidney
203
pancreas
195
heart
139
epithelium
122
brain
91
liver
89
bone element
89
connective tissue
67
blood vessel
67
vasculature
59
adipose tissue
46
artery
27
eye
25
limb
22
musculature of body
20
lung
12
nerve
9
spleen
8
blood
8
bodily fluid
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
HPAP
37
AMP
Genome assembly (visualization)
hg19
245
GRCh38
Lab
102
Klaus Kaestner, Upenn
37
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
biosample_type!
cell line
assay_title!
WGBS
assembly!
hg19
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
RNA microarray
primary cell
pancreatic alpha cell
42
29
6
pancreatic beta cell
11
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 7 more…
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
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