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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
total RNA-seq
190
ChIP-seq
133
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
190
DNA binding
Target of assay
132
histone
132
histone modification
68
broad histone mark
64
narrow histone mark
40
control
18
transcription factor
8
RNA binding protein
Date released
94
August, 2017
51
October, 2018
32
September, 2018
6
September, 2017
3
May, 2021
2
March, 2020
2
May, 2019
Available data
170
bam
147
fastq
142
bigWig
121
bed narrowPeak
53
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
183
Homo sapiens
Biosample type
117
tissue
70
primary cell
cell line
3
in vitro differentiated cells
Organ
218
brain
190
pancreas
174
liver
153
connective tissue
114
epithelium
96
vasculature
93
blood vessel
88
heart
73
adipose tissue
66
limb
42
kidney
39
musculature of body
35
nerve
28
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
188
AMP
2
T1D
Genome assembly (visualization)
144
hg19
138
GRCh38
Lab
190
AMP-T2D consortium
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
in vitro differentiated cells
pancreatic PP cell
3
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