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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1414
total RNA-seq
1387
ChIP-seq
502
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
21
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
15
July, 2019
6
August, 2017
4
November, 2020
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
25
Homo sapiens
Biosample type
15
tissue
10
primary cell
cell line
Organ
6
epithelium
6
pancreas
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
25
AMP
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
assembly!
hg18
BIOSAMPLE
ASSAY
25 results
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RRBS
MeRIP-seq
tissue
islet of Langerhans
1
4
skeletal muscle tissue
4
brain
1
heart left ventricle
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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