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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
51
single cell RNA-seq
42
ChIP-seq
7
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
59
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
71
August, 2021
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
5
May, 2019
3
December, 2019
3
February, 2021
Available data
175
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
273
Homo sapiens
Biosample type
237
tissue
36
primary cell
cell line
Organ
848
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
327
heart
286
brain
273
kidney
170
vasculature
164
blood vessel
122
limb
95
musculature of body
75
artery
71
bone element
61
eye
43
nerve
28
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
226
AMP
47
KPMP
Genome assembly (visualization)
193
GRCh38
117
hg19
Lab
141
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
2
audit script error
biosample_type!
cell line
assembly!
hg18
files.file_type!
txt
BIOSAMPLE
ASSAY
273 results
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DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
51
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
10
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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