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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
338
Transcription
136
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
134
May, 2022
94
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
4
March, 2020
3
March, 2023
3
October, 2022
Available data
192
bigWig
182
bam
169
fastq
153
zippedFastqFolder
102
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
625
Homo sapiens
Biosample type
529
primary cell
97
tissue
cell line
2
stem cell
Organ
182
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
193
GRCh38
185
hg19
Lab
324
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
biosample_type!
cell line
audit.WARNING.category!
inconsistent control run_type
award.project!
AMP
BIOSAMPLE
ASSAY
628 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
stem cell
SB Ad3.1
1
1
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