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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
436
ChIP-seq
238
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
16
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
pCHi-C
Assay category
61
DNA accessibility
Date released
18
May, 2022
14
September, 2018
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
3
September, 2020
1
March, 2019
Available data
268
bed narrowPeak
165
bam
133
bigWig
64
xls
61
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
13
tsv
11
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
61
Homo sapiens
Biosample type
32
primary cell
29
tissue
Organ
56
pancreas
32
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
liver
1
spleen
Project
51
AMP
10
HPAP
Genome assembly (visualization)
49
hg19
42
GRCh38
Lab
31
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
biosample_type!
cell line
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
61 results
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ATAC-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
islet of Langerhans
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
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