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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
2
Hi-C
1
ATAC-seq
1
total RNA-seq
Assay category
48
Transcription
2
3D chromatin structure
1
DNA accessibility
Date released
47
September, 2023
2
August, 2021
2
March, 2019
Available data
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
51
Homo sapiens
Biosample type
51
tissue
cell line
Organ
47
kidney
4
pancreas
Project
47
KPMP
4
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
3296
AMP-T2D consortium
338
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
cell line
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
51 results
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single cell RNA-seq
Hi-C
ATAC-seq
total RNA-seq
tissue
kidney
47
islet of Langerhans
2
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