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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
60
total RNA-seq
47
WGBS
10
snATAC-seq
3
Hi-C
2
ChIP-seq
Assay category
70
DNA accessibility
60
Transcription
47
DNA methylation
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
March, 2020
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
12
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
2
bam
2
bed narrowPeak
Organism
182
Homo sapiens
Biosample type
152
primary cell
30
tissue
cell line
Organ
182
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
12
GRCh38
5
hg19
Lab
152
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
audit script error
biosample_type!
cell line
award.project!
AMP
BIOSAMPLE
ASSAY
182 results
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ATAC-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
7
6
2
pancreas
4
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