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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
total RNA-seq
178
ATAC-seq
157
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
7
Hi-C
4
MeRIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
426
Transcription
260
DNA accessibility
157
DNA binding
47
DNA methylation
7
3D chromatin structure
Target of assay
149
histone
149
histone modification
84
broad histone mark
65
narrow histone mark
5
RNA binding protein
5
control
5
transcription factor
2
nucleotide modification
Date released
198
May, 2022
188
May, 2021
130
August, 2021
94
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
7
August, 2020
5
March, 2019
4
November, 2020
3
March, 2023
3
October, 2022
1
October, 2017
Available data
286
bigWig
256
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
103
tsv
84
tagAlign
64
xls
63
txt
6
hic
4
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
Organism
915
Homo sapiens
Biosample type
564
primary cell
352
tissue
in vitro differentiated cells
cell line
2
stem cell
Organ
215
pancreas
189
kidney
152
epithelium
40
heart
40
liver
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
294
AMP
231
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
309
GRCh38
261
hg19
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
biosample_type!
cell line
in vitro differentiated cells
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
918 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
MeRIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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tissue
kidney
49
75
58
6
1
islet of Langerhans
12
34
6
2
4
left cardiac atrium
40
liver
20
20
lung
9
10
+ See 2 more…
stem cell
SB Ad3.1
1
1
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