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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
174
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
DNA binding
28
DNA accessibility
6
DNA methylation
4
Transcription
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
63
December, 2017
54
August, 2017
50
May, 2020
20
May, 2022
7
November, 2018
6
July, 2019
6
October, 2019
4
August, 2021
2
June, 2019
2
March, 2020
1
February, 2021
Available data
161
bam
136
bigWig
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
215
Homo sapiens
Biosample type
cell line
191
tissue
15
in vitro differentiated cells
9
primary cell
Organ
490
pancreas
348
epithelium
307
heart
279
kidney
269
brain
215
liver
210
connective tissue
161
vasculature
155
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
71
artery
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
141
hg19
109
GRCh38
Lab
195
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
145
20
2
3
1
1
1
1
1
right lobe of liver
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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