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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
164
ChIP-seq
18
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
178
Transcription
164
DNA binding
18
DNA accessibility
1
DNA methylation
Target of assay
139
histone
139
histone modification
76
broad histone mark
63
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
49
March, 2020
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
298
bigWig
272
bam
169
tsv
132
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
378
Homo sapiens
Biosample type
206
primary cell
132
in vitro differentiated cells
40
tissue
cell line
Organ
40
pancreas
5
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
226
AMP
152
T1D
Genome assembly (visualization)
311
hg19
271
GRCh38
Lab
235
Kyle Gaulton, UCSD
143
AMP-T2D consortium
Audit category:
69
inconsistent ontology term
biosample_type!
cell line
stem cell
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
See all biosamples
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