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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
67
total RNA-seq
47
WGBS
20
ChIP-seq
11
snATAC-seq
7
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
80
DNA accessibility
67
Transcription
49
DNA methylation
20
DNA binding
7
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
80
May, 2022
55
February, 2023
20
August, 2017
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
567
bigWig
471
fastq
383
tsv
193
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
228
Homo sapiens
Biosample type
152
primary cell
76
tissue
cell line
Organ
228
pancreas
206
kidney
179
epithelium
142
heart
93
bone element
91
connective tissue
75
liver
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
48
AMP
28
T1D
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
152
Klaus Kaestner, Upenn
38
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
audit script error
biosample_type!
cell line
files.file_type!
bam
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
12
20
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
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