Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
50
total RNA-seq
6
snATAC-seq
4
ChIP-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
70
DNA accessibility
4
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
593
February, 2021
340
May, 2020
303
August, 2017
268
October, 2019
246
May, 2021
233
August, 2021
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
79
November, 2017
76
October, 2018
73
September, 2018
59
September, 2020
51
December, 2017
49
April, 2018
47
September, 2023
45
March, 2020
40
May, 2024
40
November, 2019
31
June, 2019
25
February, 2020
19
April, 2020
19
October, 2017
18
November, 2018
16
January, 2021
15
May, 2023
11
September, 2017
9
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
4
March, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
99
tsv
67
bed narrowPeak
64
xls
57
txt
4
bam
4
tagAlign
3
bed bed3+
3
bigWig
1
bedpe bed3+
1
hic
Organism
232
Homo sapiens
Biosample type
229
tissue
cell line
in vitro differentiated cells
4
primary cell
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
4
epithelium
4
liver
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
233
AMP
Genome assembly (visualization)
67
GRCh38
4
hg19
Lab
128
Katalin Susztak, Upenn
103
AMP-T2D consortium
2
Bing Ren, UCSD
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
233 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
ChIP-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
hepatocyte
4
See all biosamples
Download