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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
1
Hi-C
Assay category
7
DNA accessibility
1
3D chromatin structure
Date released
4
February, 2021
3
February, 2023
1
March, 2019
Available data
2810
bam
2647
bigWig
1481
tsv
1413
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
tissue
Organ
4
connective tissue
1
pancreas
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
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