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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
35
DNA binding
14
Transcription
11
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
40
October, 2019
19
April, 2020
1
February, 2020
1
March, 2020
Available data
42
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
6
tsv
2
bed bed3+
bed broadPeak
2
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
61
tissue
Organ
834
pancreas
674
connective tissue
488
adipose tissue
423
epithelium
385
liver
297
heart
257
kidney
239
brain
159
bone element
153
vasculature
151
blood vessel
86
limb
71
artery
57
eye
50
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
19
LungMap
Genome assembly (visualization)
29
GRCh38
29
hg19
Lab
42
AMP-T2D consortium
19
Xin Sun, UCSD
biosample_type!
cell line
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
35
5
1
lung
10
9
1
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