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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
18
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
narrow histone mark
6
control
Date released
11
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
42
Homo sapiens
Biosample type
33
tissue
9
primary cell
Organ
774
pancreas
642
connective tissue
477
adipose tissue
382
epithelium
334
liver
257
heart
242
kidney
159
bone element
130
brain
129
vasculature
127
blood vessel
71
limb
65
artery
54
eye
42
musculature of body
33
nerve
22
spleen
21
embryo
20
lung
16
skeleton
12
vein
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
biosample_type!
cell line
files.file_type!
bed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
1
4
1
1
1
1
muscle of leg
5
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
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