Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
17
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
7
May, 2019
5
July, 2019
2
March, 2020
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
57
Homo sapiens
Biosample type
44
tissue
13
primary cell
Organ
626
pancreas
593
connective tissue
442
adipose tissue
315
liver
266
epithelium
243
brain
145
heart
129
kidney
119
vasculature
114
blood vessel
114
limb
66
bone element
57
musculature of body
42
nerve
36
artery
28
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
57
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
57
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
psoas muscle
2
skeletal muscle tissue
1
1
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
See all biosamples
Download