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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
17
total RNA-seq
Assay category
47
DNA accessibility
37
DNA binding
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
60
May, 2021
24
May, 2022
18
February, 2023
16
January, 2021
Available data
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
118
Homo sapiens
Biosample type
52
tissue
42
in vitro differentiated cells
24
primary cell
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
67
AMP
51
T1D
Genome assembly (visualization)
18
hg19
Lab
946
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
118
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bigWig
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
total RNA-seq
tissue
islet of Langerhans
29
6
11
pancreas
4
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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