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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
21
ChIP-seq
19
RRBS
16
WGBS
Assay category
201
DNA accessibility
35
DNA methylation
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
23
July, 2019
21
August, 2017
15
November, 2018
6
November, 2017
6
October, 2019
1
November, 2020
Available data
2774
bam
2618
bigWig
1475
tsv
1351
bed narrowPeak
931
fastq
662
bigBed narrowPeak
378
tagAlign
266
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
257
Homo sapiens
Biosample type
197
tissue
cell line
59
primary cell
1
in vitro differentiated cells
Organ
82
kidney
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
12
connective tissue
12
pancreas
7
liver
5
eye
4
adipose tissue
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
257
AMP
Genome assembly (visualization)
234
GRCh38
218
hg19
Lab
257
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
organ_slims!
artery
BIOSAMPLE
ASSAY
257 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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