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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
DNase-seq
21
ChIP-seq
Assay category
169
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
155
June, 2019
15
August, 2017
9
November, 2018
6
November, 2017
4
October, 2019
1
November, 2020
Available data
2696
bam
2516
bigWig
1474
tsv
1281
bed narrowPeak
931
fastq
603
bigBed narrowPeak
378
tagAlign
234
bed bed3+
227
bed broadPeak
190
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
190
Homo sapiens
Biosample type
140
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
38
brain
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
190
AMP
Genome assembly (visualization)
186
GRCh38
167
hg19
Lab
190
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
organ_slims!
limb
BIOSAMPLE
ASSAY
190 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 33 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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