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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
206
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
434
DNA binding
236
DNA accessibility
Target of assay
359
histone
359
histone modification
225
broad histone mark
134
narrow histone mark
75
transcription factor
30
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
210
June, 2019
97
May, 2019
64
April, 2019
63
November, 2017
60
October, 2019
45
October, 2018
41
August, 2017
36
December, 2017
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2519
bam
2348
bigWig
1350
tsv
1241
bed narrowPeak
790
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
245
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
664
Homo sapiens
Biosample type
561
tissue
cell line
109
primary cell
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
84
pancreas
83
vasculature
79
blood vessel
61
epithelium
51
liver
47
musculature of body
26
nerve
25
artery
25
connective tissue
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
670
AMP
Genome assembly (visualization)
660
GRCh38
595
hg19
Lab
670
AMP-T2D consortium
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
BIOSAMPLE
ASSAY
670 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
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