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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
207
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
398
DNA binding
239
DNA accessibility
Target of assay
354
histone
354
histone modification
222
broad histone mark
132
narrow histone mark
44
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
210
June, 2019
97
May, 2019
64
April, 2019
63
November, 2017
62
October, 2019
December, 2017
45
October, 2018
42
August, 2017
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2716
bam
2535
bigWig
1481
tsv
1301
bed narrowPeak
837
fastq
637
bigBed narrowPeak
378
tagAlign
263
bed broadPeak
255
bed bed3+
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
631
Homo sapiens
Biosample type
525
tissue
cell line
109
primary cell
3
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
84
pancreas
83
vasculature
79
blood vessel
61
epithelium
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
15
liver
13
spleen
13
vein
10
adipose tissue
6
eye
Project
637
AMP
Genome assembly (visualization)
625
GRCh38
562
hg19
Lab
637
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
month_released!
December, 2017
BIOSAMPLE
ASSAY
637 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
heart
7
18
+ See 53 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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