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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
1
November, 2019
Available data
2605
bam
2351
bigWig
1378
tsv
1153
bed narrowPeak
736
fastq
687
bigBed narrowPeak
294
tagAlign
266
bed bed3+
261
bed broadPeak
226
bigBed broadPeak
94
txt
35
bed bedMethyl
35
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
8
csv
4
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
15
Homo sapiens
Biosample type
9
tissue
4
in vitro differentiated cells
2
primary cell
cell line
Organ
3
blood vessel
3
heart
3
vasculature
2
epithelium
2
musculature of body
2
pancreas
2
vein
1
liver
Project
15
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
See all biosamples
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