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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
total RNA-seq
152
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
431
Transcription
270
DNA accessibility
186
DNA binding
47
DNA methylation
7
3D chromatin structure
Date released
81
February, 2023
59
May, 2021
59
May, 2022
58
August, 2021
56
September, 2020
47
September, 2023
45
May, 2020
12
February, 2021
9
April, 2020
3
May, 2023
2
March, 2023
Available data
132
fastq
102
bam
98
bigWig
97
tsv
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
429
Homo sapiens
Biosample type
275
primary cell
149
tissue
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
66
pancreas
53
epithelium
20
liver
9
lung
Project
177
HPAP
101
T1D
95
AMP
47
KPMP
9
LungMap
2
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
177
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
2
Anna Gloyn, Oxford
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
lab.title!
AMP-T2D consortium
target.investigated_as!
control
BIOSAMPLE
ASSAY
431 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
49
58
liver
20
islet of Langerhans
12
lung
9
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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