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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
205
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
4
October, 2017
4
October, 2019
1
March, 2019
1
November, 2020
Available data
2586
bam
2412
bigWig
1385
tsv
1268
bed narrowPeak
907
fastq
674
bigBed narrowPeak
294
tagAlign
266
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
154
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
20
bedpe bed3+
19
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
213
tissue
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
vein
3
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
235
GRCh38
235
hg19
Lab
257
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
lab.title!
Kyle Gaulton, UCSD
organ_slims!
vein
BIOSAMPLE
ASSAY
259 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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