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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ChIP-seq
Assay category
293
DNA binding
Target of assay
236
histone
236
histone modification
140
narrow histone mark
96
broad histone mark
53
control
4
transcription factor
Date released
90
May, 2021
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
Available data
2528
bam
2328
bigWig
1392
tsv
1231
bed narrowPeak
645
bigBed narrowPeak
639
fastq
293
tagAlign
237
bed bed3+
222
bed broadPeak
211
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
293
Homo sapiens
Biosample type
179
tissue
88
primary cell
26
in vitro differentiated cells
cell line
Organ
118
brain
54
liver
7
epithelium
3
pancreas
1
pituitary gland
Project
209
AMP
84
T1D
Genome assembly (visualization)
215
GRCh38
183
hg19
Lab
209
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
month_released!
August, 2017
January, 2018
BIOSAMPLE
ASSAY
293 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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