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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
103
ATAC-seq
50
ChIP-seq
40
single cell RNA-seq
Assay category
246
Transcription
103
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
619
February, 2021
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
283
bam
263
bigWig
188
tsv
50
tagAlign
41
fastq
27
bed narrowPeak
19
zippedFastqFolder
Organism
399
Homo sapiens
Biosample type
206
primary cell
193
tissue
cell line
Organ
193
liver
19
epithelium
19
pancreas
Project
295
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
260
hg19
210
GRCh38
Lab
295
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
biosample_type!
cell line
month_released!
August, 2017
BIOSAMPLE
ASSAY
399 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
2
macrophage
11
+ See 27 more…
tissue
liver
143
50
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