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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
167
DNase-seq
22
ATAC-seq
4
FAIRE-seq
Assay category
368
DNA binding
193
DNA accessibility
Target of assay
293
histone
293
histone modification
180
broad histone mark
113
narrow histone mark
75
transcription factor
30
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
178
June, 2019
91
May, 2019
64
April, 2019
63
November, 2017
50
December, 2017
45
October, 2018
August, 2017
17
November, 2018
16
October, 2019
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2414
bam
2284
bigWig
1385
tsv
1179
bed narrowPeak
644
fastq
561
bigBed narrowPeak
293
tagAlign
201
bed bed3+
186
bed broadPeak
175
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
561
Homo sapiens
Biosample type
455
tissue
cell line
90
primary cell
16
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
limb
83
vasculature
79
blood vessel
72
epithelium
67
pancreas
59
liver
47
musculature of body
26
nerve
25
artery
25
connective tissue
18
ureter
13
spleen
13
vein
8
adipose tissue
6
eye
Project
561
AMP
Genome assembly (visualization)
554
GRCh38
486
hg19
Lab
561
AMP-T2D consortium
Audit category:
27
inconsistent control
23
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
biosample_type!
cell line
month_released!
August, 2017
organ_slims!
limb
BIOSAMPLE
ASSAY
561 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
heart
7
18
+ See 46 more…
primary cell
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic beta cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
2
See all biosamples
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