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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
8
ChIP-seq
Assay category
201
DNA accessibility
8
DNA binding
Target of assay
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
3
transcription factor
2
broad histone mark
Date released
187
June, 2019
August, 2017
9
November, 2018
6
November, 2017
6
October, 2019
1
November, 2020
Available data
2486
bam
2344
bigWig
1387
tsv
1244
bed narrowPeak
644
fastq
619
bigBed narrowPeak
293
tagAlign
235
bed bed3+
220
bed broadPeak
209
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
209
Homo sapiens
Biosample type
174
tissue
cell line
35
primary cell
Organ
78
kidney
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
nerve
1
spleen
Project
209
AMP
Genome assembly (visualization)
207
GRCh38
186
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
month_released!
August, 2017
organ_slims!
nerve
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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