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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
126
ChIP-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
126
DNA binding
26
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
38
narrow histone mark
37
control
37
transcription factor
14
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
289
bam
272
bigWig
159
tsv
115
bed narrowPeak
70
fastq
59
bigBed narrowPeak
54
tagAlign
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hdf5
1
hic
Organism
336
Homo sapiens
Biosample type
cell line
307
tissue
15
in vitro differentiated cells
14
primary cell
Organ
666
pancreas
559
connective tissue
434
adipose tissue
416
epithelium
336
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
75
artery
70
musculature of body
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
336
AMP
Genome assembly (visualization)
275
hg19
244
GRCh38
Lab
296
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
biosample_type!
cell line
month_released!
August, 2017
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
336 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
single cell RNA-seq
tissue
liver
167
97
20
2
1
1
1
1
right lobe of liver
3
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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