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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
ChIP-seq
196
ATAC-seq
178
DNase-seq
86
RNA microarray
74
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1071
Transcription
400
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1185
bam
1157
bigWig
977
tsv
325
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1640
Homo sapiens
Biosample type
1641
tissue
809
primary cell
175
in vitro differentiated cells
cell line
7
stem cell
Organ
472
connective tissue
414
adipose tissue
386
pancreas
206
liver
158
bone element
144
kidney
98
heart
56
brain
56
limb
54
blood vessel
54
eye
54
vasculature
53
musculature of body
43
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1546
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1225
hg19
1205
GRCh38
Lab
1459
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
biosample_type!
cell line
month_released!
August, 2021
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
1641 results
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total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
291
68
1
6
4
7
2
1
1
4
liver
167
20
2
1
3
1
1
1
1
bone element
84
kidney
11
13
56
1
1
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