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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
6
Transcription
Target of assay
10
histone
10
histone modification
7
control
7
narrow histone mark
3
broad histone mark
2
transcription factor
Date released
13
February, 2018
10
December, 2017
2
May, 2021
1
January, 2018
Available data
25
bam
24
fastq
18
bigWig
11
bed narrowPeak
6
tsv
2
bed bed3+
Organism
26
Homo sapiens
Biosample type
26
in vitro differentiated cells
Organ
843
pancreas
673
connective tissue
490
adipose tissue
436
epithelium
385
liver
286
brain
235
heart
207
kidney
164
vasculature
159
bone element
158
blood vessel
122
limb
96
musculature of body
73
artery
61
eye
43
nerve
26
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
26
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
biosample_type!
cell line
month_released!
August, 2021
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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