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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
DNase-seq
21
ChIP-seq
Assay category
182
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
164
June, 2019
15
August, 2017
9
November, 2018
8
October, 2019
6
November, 2017
1
November, 2020
Available data
2475
bigWig
2457
bam
1290
tsv
1171
bed narrowPeak
641
fastq
612
bigBed narrowPeak
242
bed bed3+
239
bed broadPeak
206
tagAlign
203
bigBed broadPeak
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
19
hic
11
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
203
Homo sapiens
Biosample type
160
tissue
cell line
42
primary cell
1
in vitro differentiated cells
Organ
71
kidney
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
16
vasculature
12
blood vessel
8
connective tissue
5
liver
4
artery
4
eye
4
pancreas
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
203
AMP
Genome assembly (visualization)
222
GRCh38
203
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
month_released!
August, 2021
BIOSAMPLE
ASSAY
203 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 28 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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